HL_6NDK_105

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

6NDK|1|RA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_105 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.132

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6NDK|1|RA|G|2819
6NDK|1|RA|A|2820
6NDK|1|RA|A|2821
6NDK|1|RA|G|2822
6NDK|1|RA|A|2823
6NDK|1|RA|C|2824
6NDK|1|RA|C|2825
6NDK|1|RA|A|2826
6NDK|1|RA|C|2827

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RR

50S ribosomal protein L17

Chain RT

50S ribosomal protein L19