HL_6NDK_116

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_116 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1475

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6NDK|1|XA|C|320
6NDK|1|XA|A|321
6NDK|1|XA|C|322
6NDK|1|XA|U|323
6NDK|1|XA|G|324
6NDK|1|XA|A|325
6NDK|1|XA|G|326
6NDK|1|XA|A|327
6NDK|1|XA|C|328
6NDK|1|XA|A|329
6NDK|1|XA|C|330
6NDK|1|XA|G|331
6NDK|1|XA|G|332
6NDK|1|XA|G|333

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20