HL_6NDK_137

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_137 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1758

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6NDK|1|XA|C|1314
6NDK|1|XA|U|1315
6NDK|1|XA|G|1316
6NDK|1|XA|C|1317
6NDK|1|XA|A|1318
6NDK|1|XA|A|1319
6NDK|1|XA|C|1320
6NDK|1|XA|C|1321
6NDK|1|XA|C|1322
6NDK|1|XA|G|1323

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XM

30S ribosomal protein S13

Chain XN

30S ribosomal protein S14 type Z

Chain XS

30S ribosomal protein S19