HL_6NDK_149

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6NDK|1|YA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_149 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.1834

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6NDK|1|YA|G|194
6NDK|1|YA|A|195
6NDK|1|YA|A|196
6NDK|1|YA|A|197
6NDK|1|YA|C|198
6NDK|1|YA|A|199
6NDK|1|YA|U|200
6NDK|1|YA|C|201

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15