HL_6NDK_158

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_158 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.1584

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6NDK|1|YA|C|462
6NDK|1|YA|G|463
6NDK|1|YA|U|464
6NDK|1|YA|G|465
6NDK|1|YA|A|466
6NDK|1|YA|G|467

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YF

50S ribosomal protein L4