HL_6NDK_161
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 6NDK|1|YA|C|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6NDK_161 not in the Motif Atlas
- Geometric match to HL_7A0S_018
- Geometric discrepancy: 0.1803
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6NDK|1|YA|U|566
6NDK|1|YA|A|567
6NDK|1|YA|U|568
6NDK|1|YA|U|569
6NDK|1|YA|G|570
6NDK|1|YA|A|571
6NDK|1|YA|A|572
6NDK|1|YA|G|573
6NDK|1|YA|C|574
6NDK|1|YA|A|575
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y5
- 50S ribosomal protein L32
- Chain YE
- 50S ribosomal protein L3
- Chain YP
- 50S ribosomal protein L15
- Chain YV
- 50S ribosomal protein L21
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