HL_6NDK_185

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6NDK|1|YA|A|1614, 6NDK|1|YA|A|1616, 6NDK|1|YA|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_185 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1202

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6NDK|1|YA|C|1612
6NDK|1|YA|G|1613
6NDK|1|YA|A|1614
6NDK|1|YA|C|1615
6NDK|1|YA|A|1616
6NDK|1|YA|C|1617
6NDK|1|YA|A|1618
6NDK|1|YA|G|1619

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y7

50S ribosomal protein L34

Chain YW

50S ribosomal protein L22