HL_6NDK_227
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CGUUCGGGAACG
- Length
- 12 nucleotides
- Bulged bases
- 6NDK|1|XY|U|32, 6NDK|1|XY|U|33
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6NDK_227 not in the Motif Atlas
- Geometric match to HL_5ID6_001
- Geometric discrepancy: 0.2128
- The information below is about HL_5ID6_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_69752.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6NDK|1|XY|C|30
6NDK|1|XY|G|31
6NDK|1|XY|U|32
6NDK|1|XY|U|33
6NDK|1|XY|C|34
6NDK|1|XY|G|35
6NDK|1|XY|G|36
6NDK|1|XY|G|37
6NDK|1|XY|A|38
6NDK|1|XY|A|39
6NDK|1|XY|C|40
6NDK|1|XY|G|41
Current chains
- Chain XY
- A-site ASLSufA6 A37.5
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XL
- 30S ribosomal protein S12
- Chain XX
- mRNA
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: