HL_6NDK_230

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NDK_230 not in the Motif Atlas

Homologous match to HL_9DFE_045

Geometric discrepancy: 0.1903

The information below is about HL_9DFE_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6NDK|1|YA|U|1864
6NDK|1|YA|G|1865
6NDK|1|YA|C|1866
6NDK|1|YA|A|1876
6NDK|1|YA|A|1877
6NDK|1|YA|G|1878

Current chains

Chain YA

23S rRNA

Nearby chains