HL_6NM9_001

3D structure

PDB id

6NM9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of the LbCas12a-crRNA-AcrVA4 dimer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.38 Å

Loop

Sequence

CUAAGUG

Length

7 nucleotides

Bulged bases

6NM9|1|E|A|13, 6NM9|1|E|U|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NM9_001 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1924

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6NM9|1|E|C|11
6NM9|1|E|U|12
6NM9|1|E|A|13
6NM9|1|E|A|14
6NM9|1|E|G|15
6NM9|1|E|U|16
6NM9|1|E|G|17

Current chains

Chain E

RNA (25-MER)

Nearby chains

Chain C

AcrVA4

Chain D

Cpf1