HL_6NQB_019

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGCAACGCG

Length

12 nucleotides

Bulged bases

6NQB|1|A|G|971, 6NQB|1|A|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NQB_019 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2477

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6NQB|1|A|C|962
6NQB|1|A|G|963
6NQB|1|A|A|964
6NQB|1|A|U|965
6NQB|1|A|G|966
6NQB|1|A|C|967
6NQB|1|A|A|968
6NQB|1|A|A|969
6NQB|1|A|C|970
6NQB|1|A|G|971
6NQB|1|A|C|972
6NQB|1|A|G|973

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14