HL_6NQB_020

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAGAGAUGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NQB_020 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3024

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6NQB|1|A|U|1010
6NQB|1|A|C|1011
6NQB|1|A|A|1012
6NQB|1|A|G|1013
6NQB|1|A|A|1014
6NQB|1|A|G|1015
6NQB|1|A|A|1016
6NQB|1|A|U|1017
6NQB|1|A|G|1018
6NQB|1|A|A|1019

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19