HL_6NSH_062

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

6NSH|1|RA|A|1067, 6NSH|1|RA|G|1068, 6NSH|1|RA|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NSH_062 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.3088

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6NSH|1|RA|U|1065
6NSH|1|RA|U|1066
6NSH|1|RA|A|1067
6NSH|1|RA|G|1068
6NSH|1|RA|A|1069
6NSH|1|RA|A|1070
6NSH|1|RA|G|1071
6NSH|1|RA|C|1072
6NSH|1|RA|A|1073

Current chains

Chain RA

23S rRNA

Nearby chains