HL_6NSH_117

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGACGAG

Length

7 nucleotides

Bulged bases

6NSH|1|XA|C|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NSH_117 not in the Motif Atlas

Homologous match to HL_4LFB_012

Geometric discrepancy: 0.3296

The information below is about HL_4LFB_012

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6NSH|1|XA|C|458
6NSH|1|XA|G|464
6NSH|1|XA|A|465
6NSH|1|XA|C|466
6NSH|1|XA|G|467
6NSH|1|XA|A|468
6NSH|1|XA|G|474

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16