HL_6NTA_151

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6NTA|1|YA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NTA_151 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1025

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6NTA|1|YA|G|382
6NTA|1|YA|U|383
6NTA|1|YA|U|384
6NTA|1|YA|C|385
6NTA|1|YA|G|386
6NTA|1|YA|U|387
6NTA|1|YA|G|388
6NTA|1|YA|G|389
6NTA|1|YA|A|390
6NTA|1|YA|G|391
6NTA|1|YA|C|392

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15