HL_6NWY_008

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1353

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6NWY|1|QA|C|320
6NWY|1|QA|A|321
6NWY|1|QA|C|322
6NWY|1|QA|U|323
6NWY|1|QA|G|324
6NWY|1|QA|A|325
6NWY|1|QA|G|326
6NWY|1|QA|A|327
6NWY|1|QA|C|328
6NWY|1|QA|A|329
6NWY|1|QA|C|330
6NWY|1|QA|G|331
6NWY|1|QA|G|332
6NWY|1|QA|G|333

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QT

30S ribosomal protein S20