HL_6NWY_055

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_055 not in the Motif Atlas

Homologous match to HL_4WF9_020

Geometric discrepancy: 0.1238

The information below is about HL_4WF9_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6NWY|1|RA|G|629
6NWY|1|RA|G|630
6NWY|1|RA|A|631
6NWY|1|RA|A|632
6NWY|1|RA|A|633
6NWY|1|RA|C|634

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15