HL_6NWY_141

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6NWY|1|XV|C|16, 6NWY|1|XV|C|17, 6NWY|1|XV|U|18, 6NWY|1|XV|G|19, 6NWY|1|XV|A|21|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_141 not in the Motif Atlas

Homologous match to HL_4V9K_033

Geometric discrepancy: 0.3654

The information below is about HL_4V9K_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6NWY|1|XV|C|13
6NWY|1|XV|A|14
6NWY|1|XV|G|15
6NWY|1|XV|C|16
6NWY|1|XV|C|17
6NWY|1|XV|U|18
6NWY|1|XV|G|19
6NWY|1|XV|G|20
6NWY|1|XV|U|21|||A
6NWY|1|XV|A|21|||B
6NWY|1|XV|G|22

Current chains

Chain XV

E-site tRNA-Pro

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA