HL_6NWY_156

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

6NWY|1|YA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_156 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1325

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6NWY|1|YA|G|382
6NWY|1|YA|U|383
6NWY|1|YA|U|384
6NWY|1|YA|C|385
6NWY|1|YA|G|386
6NWY|1|YA|U|387
6NWY|1|YA|G|388
6NWY|1|YA|G|389
6NWY|1|YA|A|390
6NWY|1|YA|G|391
6NWY|1|YA|C|392

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YP

50S ribosomal protein L15