HL_6NWY_180

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

6NWY|1|YA|A|1453, 6NWY|1|YA|U|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_180 not in the Motif Atlas

Homologous match to HL_7RQB_037

Geometric discrepancy: 0.1419

The information below is about HL_7RQB_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32426.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

6NWY|1|YA|C|1451
6NWY|1|YA|A|1453
6NWY|1|YA|U|1454
6NWY|1|YA|G|1455
6NWY|1|YA|G|1456
6NWY|1|YA|A|1457
6NWY|1|YA|C|1458
6NWY|1|YA|G|1459

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YR

50S ribosomal protein L17