HL_6NWY_197

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6NWY|1|YA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_197 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.1053

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6NWY|1|YA|C|2248
6NWY|1|YA|U|2249
6NWY|1|YA|G|2250
6NWY|1|YA|G|2251
6NWY|1|YA|G|2252
6NWY|1|YA|G|2253
6NWY|1|YA|C|2254
6NWY|1|YA|G|2255
6NWY|1|YA|G|2256

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YQ

50S ribosomal protein L16