HL_6NWY_212

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

6NWY|1|YA|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NWY_212 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.1135

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6NWY|1|YA|G|2819
6NWY|1|YA|A|2820
6NWY|1|YA|A|2821
6NWY|1|YA|G|2822
6NWY|1|YA|A|2823
6NWY|1|YA|C|2824
6NWY|1|YA|C|2825
6NWY|1|YA|A|2826
6NWY|1|YA|C|2827

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17