HL_6NY6_005

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

6NY6|1|A|U|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NY6_005 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.404

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

6NY6|1|A|C|201
6NY6|1|A|U|202
6NY6|1|A|U|203
6NY6|1|A|U|204
6NY6|1|A|G|216

Current chains

Chain A

16S rRNA

Nearby chains