HL_6NY6_034

3D structure

PDB id

6NY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of dimeric Escherichia coli toxin YoeB bound to the Thermus thermophilus 30S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GGUGAAAGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6NY6_034 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2714

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6NY6|1|A|G|1010
6NY6|1|A|G|1011
6NY6|1|A|U|1012
6NY6|1|A|G|1013
6NY6|1|A|A|1014
6NY6|1|A|A|1015
6NY6|1|A|A|1016
6NY6|1|A|G|1017
6NY6|1|A|C|1018
6NY6|1|A|C|1019

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19