HL_6O3M_089

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6O3M|1|RA|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O3M_089 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1017

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6O3M|1|RA|C|2248
6O3M|1|RA|U|2249
6O3M|1|RA|G|2250
6O3M|1|RA|G|2251
6O3M|1|RA|G|2252
6O3M|1|RA|G|2253
6O3M|1|RA|C|2254
6O3M|1|RA|G|2255
6O3M|1|RA|G|2256

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA

Chain R0

50S ribosomal protein L27

Chain RQ

50S ribosomal protein L16