HL_6O3M_100

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O3M_100 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.1209

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6O3M|1|RA|C|2658
6O3M|1|RA|G|2659
6O3M|1|RA|A|2660
6O3M|1|RA|G|2661
6O3M|1|RA|A|2662
6O3M|1|RA|G|2663

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6