HL_6O3M_142

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GUUCGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O3M_142 not in the Motif Atlas

Homologous match to HL_4TUE_035

Geometric discrepancy: 0.1592

The information below is about HL_4TUE_035

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6O3M|1|XV|G|54
6O3M|1|XV|U|55
6O3M|1|XV|U|56
6O3M|1|XV|C|57
6O3M|1|XV|G|58
6O3M|1|XV|A|59
6O3M|1|XV|A|60
6O3M|1|XV|U|61
6O3M|1|XV|C|62

Current chains

Chain XV

P-site ASLPro

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YG

50S ribosomal protein L5

Chain YQ

50S ribosomal protein L16