3D structure

PDB id
6O7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UUUGAUCAUGG
Length
11 nucleotides
Bulged bases
6O7K|1|g|U|14
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6O7K_001 not in the Motif Atlas
Homologous match to HL_5J7L_001
Geometric discrepancy: 0.0941
The information below is about HL_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89881.5
Basepair signature
cWW-tHW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6O7K|1|g|U|12
6O7K|1|g|U|13
6O7K|1|g|U|14
6O7K|1|g|G|15
6O7K|1|g|A|16
6O7K|1|g|U|17
6O7K|1|g|C|18
6O7K|1|g|A|19
6O7K|1|g|U|20
6O7K|1|g|G|21
6O7K|1|g|G|22

Current chains

Chain g
16S ribosomal RNA

Nearby chains

Chain k
30S ribosomal protein S5
Chain t
30S ribosomal protein S12

Coloring options:


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