3D structure

PDB id
6O7K (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6O7K_029 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.192
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_02887.3
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6O7K|1|g|C|1314
6O7K|1|g|U|1315
6O7K|1|g|G|1316
6O7K|1|g|C|1317
6O7K|1|g|A|1318
6O7K|1|g|A|1319
6O7K|1|g|C|1320
6O7K|1|g|U|1321
6O7K|1|g|C|1322
6O7K|1|g|G|1323

Current chains

Chain g
16S ribosomal RNA

Nearby chains

Chain s
30S ribosomal protein S13
Chain w
30S ribosomal protein S14
Chain z
30S ribosomal protein S19

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