HL_6O7K_033

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6O7K|1|v|C|16, 6O7K|1|v|C|17, 6O7K|1|v|U|18, 6O7K|1|v|G|19, 6O7K|1|v|G|20, 6O7K|1|v|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O7K_033 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.3336

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6O7K|1|v|C|13
6O7K|1|v|A|14
6O7K|1|v|G|15
6O7K|1|v|C|16
6O7K|1|v|C|17
6O7K|1|v|U|18
6O7K|1|v|G|19
6O7K|1|v|G|20
6O7K|1|v|U|21
6O7K|1|v|A|22
6O7K|1|v|G|23

Current chains

Chain v

tRNA

Nearby chains