HL_6O8W_006

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6O8W|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_006 not in the Motif Atlas

Homologous match to HL_7RQB_006

Geometric discrepancy: 0.159

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6O8W|1|A|G|197
6O8W|1|A|A|198
6O8W|1|A|A|199
6O8W|1|A|A|200
6O8W|1|A|C|201
6O8W|1|A|A|202
6O8W|1|A|U|203
6O8W|1|A|C|204

Current chains

Chain A

50S subunit

Nearby chains

Chain M

50S ribosomal protein L15

Chain Y

50S ribosomal protein L28

Chain u

Transfer RNA; tRNA