HL_6O8W_027

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

6O8W|1|A|U|998, 6O8W|1|A|G|1001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_027 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2391

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6O8W|1|A|U|995
6O8W|1|A|G|996
6O8W|1|A|A|997
6O8W|1|A|U|998
6O8W|1|A|A|999
6O8W|1|A|A|1000
6O8W|1|A|G|1001
6O8W|1|A|A|1002

Current chains

Chain A

50S subunit

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16