HL_6O8W_033

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GCUCGUC

Length

7 nucleotides

Bulged bases

6O8W|1|A|C|1361, 6O8W|1|A|U|1365

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_033 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.159

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

6O8W|1|A|G|1360
6O8W|1|A|C|1361
6O8W|1|A|U|1362
6O8W|1|A|C|1363
6O8W|1|A|G|1364
6O8W|1|A|U|1365
6O8W|1|A|C|1366

Current chains

Chain A

50S subunit

Nearby chains

Chain O

50S ribosomal protein L17

Chain T

50S ribosomal protein L22