HL_6O8W_079

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

6O8W|1|a|C|345, 6O8W|1|a|G|346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8W_079 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2334

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6O8W|1|a|G|335
6O8W|1|a|A|336
6O8W|1|a|C|337
6O8W|1|a|U|338
6O8W|1|a|G|339
6O8W|1|a|A|340
6O8W|1|a|G|341
6O8W|1|a|A|342
6O8W|1|a|C|343
6O8W|1|a|A|344
6O8W|1|a|C|345
6O8W|1|a|G|346
6O8W|1|a|G|347
6O8W|1|a|C|348

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20