HL_6O8X_050

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6O8X|1|A|A|2044, 6O8X|1|A|A|2045, 6O8X|1|A|G|2046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8X_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1359

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6O8X|1|A|G|2041
6O8X|1|A|U|2042
6O8X|1|A|G|2043
6O8X|1|A|A|2044
6O8X|1|A|A|2045
6O8X|1|A|G|2046
6O8X|1|A|A|2047
6O8X|1|A|U|2048
6O8X|1|A|G|2049
6O8X|1|A|C|2050

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain D

50S ribosomal protein L3