HL_6O8X_079

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

GACUGAGACACGGC

Length

14 nucleotides

Bulged bases

6O8X|1|a|C|345, 6O8X|1|a|G|346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8X_079 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.236

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6O8X|1|a|G|335
6O8X|1|a|A|336
6O8X|1|a|C|337
6O8X|1|a|U|338
6O8X|1|a|G|339
6O8X|1|a|A|340
6O8X|1|a|G|341
6O8X|1|a|A|342
6O8X|1|a|C|343
6O8X|1|a|A|344
6O8X|1|a|C|345
6O8X|1|a|G|346
6O8X|1|a|G|347
6O8X|1|a|C|348

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20