HL_6O8X_090

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CAAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8X_090 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.1754

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6O8X|1|a|C|878
6O8X|1|a|A|879
6O8X|1|a|A|880
6O8X|1|a|A|881
6O8X|1|a|C|882
6O8X|1|a|G|883

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain h

30S ribosomal protein S8