HL_6O8Z_017

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

6O8Z|1|A|U|584, 6O8Z|1|A|U|587

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8Z_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.1744

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6O8Z|1|A|C|581
6O8Z|1|A|G|582
6O8Z|1|A|U|583
6O8Z|1|A|U|584
6O8Z|1|A|A|585
6O8Z|1|A|A|586
6O8Z|1|A|U|587
6O8Z|1|A|G|588

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20

Chain S

50S ribosomal protein L21