HL_6O8Z_069

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

AGAGAUGAU

Length

9 nucleotides

Bulged bases

6O8Z|1|A|G|2831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O8Z_069 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1787

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6O8Z|1|A|A|2830
6O8Z|1|A|G|2831
6O8Z|1|A|A|2832
6O8Z|1|A|G|2833
6O8Z|1|A|A|2834
6O8Z|1|A|U|2835
6O8Z|1|A|G|2836
6O8Z|1|A|A|2837
6O8Z|1|A|U|2838

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17