HL_6O9J_013

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6O9J|1|B|G|329, 6O9J|1|B|A|330, 6O9J|1|B|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9J_013 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.101

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

6O9J|1|B|G|327
6O9J|1|B|U|328
6O9J|1|B|G|329
6O9J|1|B|A|330
6O9J|1|B|C|331
6O9J|1|B|A|332
6O9J|1|B|G|333
6O9J|1|B|C|334
6O9J|1|B|C|335

Current chains

Chain B

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24