HL_6O9K_004

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6O9K|1|A|U|138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_004 not in the Motif Atlas

Geometric match to HL_4LFB_005

Geometric discrepancy: 0.2837

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6O9K|1|A|U|137
6O9K|1|A|U|138
6O9K|1|A|U|139
6O9K|1|A|C|140
6O9K|1|A|G|141
6O9K|1|A|A|142

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23