HL_6O9K_011

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6O9K|1|A|G|329, 6O9K|1|A|A|330, 6O9K|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_011 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1272

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6O9K|1|A|G|327
6O9K|1|A|U|328
6O9K|1|A|G|329
6O9K|1|A|A|330
6O9K|1|A|C|331
6O9K|1|A|A|332
6O9K|1|A|G|333
6O9K|1|A|C|334
6O9K|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24