3D structure

PDB id
6O9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UGAAAGG
Length
7 nucleotides
Bulged bases
6O9K|1|A|A|781, 6O9K|1|A|G|784
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6O9K_023 not in the Motif Atlas
Geometric match to HL_5U3G_001
Geometric discrepancy: 0.316
The information below is about HL_5U3G_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

6O9K|1|A|U|779
6O9K|1|A|G|780
6O9K|1|A|A|781
6O9K|1|A|A|782
6O9K|1|A|A|783
6O9K|1|A|G|784
6O9K|1|A|G|785

Current chains

Chain A
23S rRNA

Nearby chains

Chain 9
50S ribosomal protein L2

Coloring options:


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