3D structure

PDB id
6O9K (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CGACACAG
Length
8 nucleotides
Bulged bases
6O9K|1|A|A|1614, 6O9K|1|A|A|1616, 6O9K|1|A|A|1618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6O9K_040 not in the Motif Atlas
Homologous match to HL_4WF9_038
Geometric discrepancy: 0.113
The information below is about HL_4WF9_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

6O9K|1|A|C|1612
6O9K|1|A|G|1613
6O9K|1|A|A|1614
6O9K|1|A|C|1615
6O9K|1|A|A|1616
6O9K|1|A|C|1617
6O9K|1|A|A|1618
6O9K|1|A|G|1619

Current chains

Chain A
23S rRNA

Nearby chains

Chain 7
50S ribosomal protein L34
Chain S
50S ribosomal protein L22

Coloring options:


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