HL_6O9K_040

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6O9K|1|A|A|1614, 6O9K|1|A|A|1616, 6O9K|1|A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_040 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.113

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6O9K|1|A|C|1612
6O9K|1|A|G|1613
6O9K|1|A|A|1614
6O9K|1|A|C|1615
6O9K|1|A|A|1616
6O9K|1|A|C|1617
6O9K|1|A|A|1618
6O9K|1|A|G|1619

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain S

50S ribosomal protein L22