HL_6O9K_043

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCCUCGCGG

Length

9 nucleotides

Bulged bases

6O9K|1|A|C|1730, 6O9K|1|A|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6O9K_043 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.3603

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6O9K|1|A|C|1726
6O9K|1|A|C|1727
6O9K|1|A|C|1728
6O9K|1|A|U|1729
6O9K|1|A|C|1730
6O9K|1|A|G|1731
6O9K|1|A|C|1732
6O9K|1|A|G|1733
6O9K|1|A|G|1734

Current chains

Chain A

23S rRNA

Nearby chains