HL_6O9K_107

3D structure

PDB id

6O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAGCCUUGAUGGAAGUGUGGACGCCAGUCUGCAUGGCUUUAAUGUUU

Length

47 nucleotides

Bulged bases

6O9K|1|A|A|2134, 6O9K|1|A|A|2142, 6O9K|1|A|C|2146, 6O9K|1|A|A|2147, 6O9K|1|A|U|2151, 6O9K|1|A|G|2152, 6O9K|1|A|U|2180, 6O9K|1|A|U|2181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6O9K|1|A|G|2100
6O9K|1|A|A|2101
6O9K|1|A|G|2102
6O9K|1|A|C|2103
6O9K|1|A|C|2104
6O9K|1|A|U|2105
6O9K|1|A|U|2106
6O9K|1|A|G|2107
6O9K|1|A|A|2108
6O9K|1|A|U|2109
6O9K|1|A|G|2110
6O9K|1|A|G|2133
6O9K|1|A|A|2134
6O9K|1|A|A|2135
6O9K|1|A|G|2136
6O9K|1|A|U|2137
6O9K|1|A|G|2138
6O9K|1|A|U|2139
6O9K|1|A|G|2140
6O9K|1|A|G|2141
6O9K|1|A|A|2142
6O9K|1|A|C|2143
6O9K|1|A|G|2144
6O9K|1|A|C|2145
6O9K|1|A|C|2146
6O9K|1|A|A|2147
6O9K|1|A|G|2148
6O9K|1|A|U|2149
6O9K|1|A|C|2150
6O9K|1|A|U|2151
6O9K|1|A|G|2152
6O9K|1|A|C|2153
6O9K|1|A|A|2154
6O9K|1|A|U|2155
6O9K|1|A|G|2156
6O9K|1|A|G|2157
6O9K|1|A|C|2179
6O9K|1|A|U|2180
6O9K|1|A|U|2181
6O9K|1|A|U|2182
6O9K|1|A|A|2183
6O9K|1|A|A|2184
6O9K|1|A|U|2185
6O9K|1|A|G|2186
6O9K|1|A|U|2187
6O9K|1|A|U|2188
6O9K|1|A|U|2189

Current chains

Chain A

23S rRNA

Nearby chains

Chain k

30S ribosomal protein S11