HL_6OF1_029

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6OF1|1|1A|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OF1_029 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.461

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OF1|1|1A|C|1064
6OF1|1|1A|U|1065
6OF1|1|1A|U|1066
6OF1|1|1A|A|1067
6OF1|1|1A|G|1068
6OF1|1|1A|A|1069
6OF1|1|1A|A|1070
6OF1|1|1A|G|1071
6OF1|1|1A|C|1072
6OF1|1|1A|A|1073
6OF1|1|1A|G|1074

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains