HL_6OF1_075

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCUUGG

Length

6 nucleotides

Bulged bases

6OF1|1|1a|U|189|||F, 6OF1|1|1a|G|189|||G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OF1_075 not in the Motif Atlas

Homologous match to HL_4LFB_004

Geometric discrepancy: 0.1223

The information below is about HL_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

6OF1|1|1a|C|189|||C
6OF1|1|1a|C|189|||D
6OF1|1|1a|U|189|||E
6OF1|1|1a|U|189|||F
6OF1|1|1a|G|189|||G
6OF1|1|1a|G|189|||H

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1q

30S ribosomal protein S17

Chain 1t

30S ribosomal protein S20