HL_6OF1_095

3D structure

PDB id

6OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound to mRNA and A-, P-, and E-site tRNAs at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OF1_095 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0764

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6OF1|1|1a|C|1076
6OF1|1|1a|G|1077
6OF1|1|1a|U|1078
6OF1|1|1a|G|1079
6OF1|1|1a|A|1080
6OF1|1|1a|G|1081

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1b

30S ribosomal protein S2

Chain 1e

30S ribosomal protein S5

Chain 1h

30S ribosomal protein S8