HL_6OF6_008

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OF6_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0896

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6OF6|1|QA|C|320
6OF6|1|QA|A|321
6OF6|1|QA|C|322
6OF6|1|QA|U|323
6OF6|1|QA|G|324
6OF6|1|QA|A|325
6OF6|1|QA|G|326
6OF6|1|QA|A|327
6OF6|1|QA|C|328
6OF6|1|QA|A|329
6OF6|1|QA|C|330
6OF6|1|QA|G|331
6OF6|1|QA|G|332
6OF6|1|QA|G|333

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16

Chain QT

30S ribosomal protein S20