3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CACUGAGACACGGG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OF6_008 not in the Motif Atlas
Homologous match to HL_4LFB_008
Geometric discrepancy: 0.0896
The information below is about HL_4LFB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81205.3
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6OF6|1|QA|C|320
6OF6|1|QA|A|321
6OF6|1|QA|C|322
6OF6|1|QA|U|323
6OF6|1|QA|G|324
6OF6|1|QA|A|325
6OF6|1|QA|G|326
6OF6|1|QA|A|327
6OF6|1|QA|C|328
6OF6|1|QA|A|329
6OF6|1|QA|C|330
6OF6|1|QA|G|331
6OF6|1|QA|G|332
6OF6|1|QA|G|333

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QP
30S ribosomal protein S16
Chain QT
30S ribosomal protein S20

Coloring options:


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